Index _ | A | B | C | D | E | F | G | H | I | J | K | L | M | N | O | P | Q | R | S | T | U | V | W | X | Z _ _accumulator_check_args() (psyneulink.core.components.functions.stateful.integratorfunctions.AccumulatorIntegrator method) _activate_projections_for_compositions() (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism method) _add_node_aux_components() (psyneulink.core.compositions.composition.Composition method) _add_projection_from_mechanism() (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) _add_required_node_role() (psyneulink.core.compositions.composition.Composition method) _alias_owner_name() (psyneulink.core.globals.log.Log method) _analyze_graph() (psyneulink.core.compositions.composition.Composition method) _angle() (psyneulink.core.components.functions.transferfunctions.Angle method) _apply_control_allocation() (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism method) _assign_execution_ids() (psyneulink.core.compositions.composition.Composition method) _assign_roles() (psyneulink.core.compositions.pathway.Pathway method) _assign_state_feature_function() (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism method) _assign_to_mdf_model() (psyneulink.core.components.functions.function.Function_Base method), [1] (psyneulink.core.components.functions.stateful.integratorfunctions.DriftDiffusionIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.FitzHughNagumoIntegrator method) _assign_variable_from_projection() (psyneulink.core.components.ports.inputport.InputPort method) _build_pytorch_representation() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition method) _build_variable_for_input_CIM() (psyneulink.core.compositions.composition.Composition method) _check_args() (psyneulink.core.components.component.Component method) _check_controller_initialization_status() (psyneulink.core.compositions.composition.Composition method) _check_for_composition() (psyneulink.core.components.component.Component method) _check_for_duplicate_projections() (psyneulink.core.components.ports.inputport.InputPort method) (psyneulink.core.components.ports.outputport.OutputPort method) (psyneulink.core.components.ports.parameterport.ParameterPort method) _check_for_duplicates() (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism method) (psyneulink.core.components.mechanisms.modulatory.gating.gatingmechanism.GatingMechanism method) _check_for_existing_projections() (psyneulink.core.compositions.composition.Composition method) _check_for_projection_assignments() (psyneulink.core.compositions.composition.Composition method) _check_for_unnecessary_feedback_projections() (psyneulink.core.compositions.composition.Composition method) _check_for_unused_projections() (psyneulink.core.compositions.composition.Composition method) _complete_init_of_partially_initialized_nodes() (psyneulink.core.compositions.composition.Composition method) (psyneulink.core.compositions.parameterestimationcomposition.ParameterEstimationComposition method) _composition (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper attribute) _compute_conditional_rt_moments() (psyneulink.core.components.functions.distributionfunctions.DriftDiffusionAnalytical static method) _construct_combined_matches_node() (psyneulink.library.compositions.emcomposition.EMComposition method) _construct_concatenate_queries_node() (psyneulink.library.compositions.emcomposition.EMComposition method) _construct_field_weight_nodes() (psyneulink.library.compositions.emcomposition.EMComposition method) _construct_match_nodes() (psyneulink.library.compositions.emcomposition.EMComposition method) _construct_pathways() (psyneulink.library.compositions.emcomposition.EMComposition method) _construct_query_input_nodes() (psyneulink.library.compositions.emcomposition.EMComposition method) _construct_retrieved_nodes() (psyneulink.library.compositions.emcomposition.EMComposition method) _construct_softmax_gain_control_node() (psyneulink.library.compositions.emcomposition.EMComposition method) _construct_softmax_node() (psyneulink.library.compositions.emcomposition.EMComposition method) _construct_storage_node() (psyneulink.library.compositions.emcomposition.EMComposition method) _construct_value_input_nodes() (psyneulink.library.compositions.emcomposition.EMComposition method) _construct_weighted_match_nodes() (psyneulink.library.compositions.emcomposition.EMComposition method) _create_CIM_ports() (psyneulink.core.compositions.composition.Composition method) _create_learning_projection() (psyneulink.core.compositions.composition.Composition method) _create_learning_related_mechanisms() (psyneulink.core.compositions.composition.Composition method) _create_learning_related_projections() (psyneulink.core.compositions.composition.Composition method) _create_terminal_backprop_learning_components() (psyneulink.core.compositions.composition.Composition method) _dealias_owner_name() (psyneulink.core.globals.log.Log method) _default_external_input_shape (psyneulink.core.compositions.composition.Composition property) _deferred_init() (psyneulink.core.components.component.Component method) _delete_projection() (psyneulink.core.components.projections.projection.Projection_Base method) _dependent_components (psyneulink.core.components.component.Component property) (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base property) (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism property) (psyneulink.core.components.ports.port.Port_Base property) (psyneulink.core.components.projections.projection.Projection_Base property) (psyneulink.core.compositions.composition.Composition property) (psyneulink.library.components.mechanisms.processing.transfer.kohonenmechanism.KohonenMechanism property) _determine_node_roles() (psyneulink.core.compositions.composition.Composition method) _determine_origin_and_terminal_nodes_from_consideration_queue() (psyneulink.core.compositions.composition.Composition method) _encode_memory() (psyneulink.library.compositions.emcomposition.EMComposition method) _evaluate() (psyneulink.core.components.functions.optimizationfunctions.OptimizationFunction method) _EWMA_filter() (psyneulink.core.components.functions.stateful.integratorfunctions.IntegratorFunction method) _execute() (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism method) (psyneulink.core.components.mechanisms.modulatory.learning.learningmechanism.LearningMechanism method) (psyneulink.core.components.mechanisms.processing.integratormechanism.IntegratorMechanism method) (psyneulink.core.components.mechanisms.processing.transfermechanism.TransferMechanism method) (psyneulink.core.components.projections.modulatory.learningprojection.LearningProjection method) (psyneulink.library.components.mechanisms.modulatory.control.agt.lccontrolmechanism.LCControlMechanism method) (psyneulink.library.components.mechanisms.modulatory.learning.autoassociativelearningmechanism.AutoAssociativeLearningMechanism method) (psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM method) (psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism.ContrastiveHebbianMechanism method) (psyneulink.library.components.mechanisms.processing.transfer.recurrenttransfermechanism.RecurrentTransferMechanism method) _execute_afferent_projections() (psyneulink.core.components.ports.port.Port_Base method) _flatten_nested_dicts() (psyneulink.core.compositions.composition.Composition method) _function() (psyneulink.core.components.functions.distributionfunctions.DriftDiffusionAnalytical method) (psyneulink.core.components.functions.function.ArgumentTherapy method), [1] (psyneulink.core.components.functions.learningfunctions.BackPropagation method) (psyneulink.core.components.functions.learningfunctions.BayesGLM method) (psyneulink.core.components.functions.learningfunctions.ContrastiveHebbian method) (psyneulink.core.components.functions.learningfunctions.Hebbian method) (psyneulink.core.components.functions.learningfunctions.Kohonen method) (psyneulink.core.components.functions.learningfunctions.Reinforcement method) (psyneulink.core.components.functions.objectivefunctions.Distance method) (psyneulink.core.components.functions.objectivefunctions.Stability method) (psyneulink.core.components.functions.optimizationfunctions.GaussianProcess method) (psyneulink.core.components.functions.optimizationfunctions.GradientOptimization method) (psyneulink.core.components.functions.optimizationfunctions.GridSearch method) (psyneulink.core.components.functions.optimizationfunctions.OptimizationFunction method) (psyneulink.core.components.functions.selectionfunctions.OneHot method) (psyneulink.core.components.functions.stateful.integratorfunctions.AccumulatorIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.AdaptiveIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.DriftDiffusionIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.DriftOnASphereIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.DualAdaptiveIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.FitzHughNagumoIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.InteractiveActivationIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.LeakyCompetingIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.OrnsteinUhlenbeckIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.SimpleIntegrator method) (psyneulink.core.components.functions.transferfunctions.Angle method) (psyneulink.core.components.functions.transferfunctions.BinomialDistort method) (psyneulink.core.components.functions.transferfunctions.Dropout method) (psyneulink.core.components.functions.transferfunctions.Exponential method) (psyneulink.core.components.functions.transferfunctions.Gaussian method) (psyneulink.core.components.functions.transferfunctions.GaussianDistort method) (psyneulink.core.components.functions.transferfunctions.Identity method) (psyneulink.core.components.functions.transferfunctions.Linear method) (psyneulink.core.components.functions.transferfunctions.Logistic method) (psyneulink.core.components.functions.transferfunctions.ReLU method) (psyneulink.core.components.functions.transferfunctions.SoftMax method) (psyneulink.core.components.functions.transferfunctions.Tanh method) (psyneulink.core.components.functions.transferfunctions.TransferWithCosts method) _gaussian_process_sample() (psyneulink.core.components.functions.optimizationfunctions.GaussianProcess method) _gaussian_process_satisfied() (psyneulink.core.components.functions.optimizationfunctions.GaussianProcess method) _gen_llvm_function() (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism method) _gen_llvm_function_body() (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) _get_all_nodes() (psyneulink.core.compositions.composition.Composition method) _get_allowed_arguments() (psyneulink.core.components.component.Component method) (psyneulink.core.components.functions.userdefinedfunction.UserDefinedFunction method) _get_autodiff_inputs_values() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition method) _get_autodiff_targets_values() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition method) _get_back_prop_error_sources() (psyneulink.core.compositions.composition.Composition method) _get_by_time_scale() (psyneulink.core.scheduling.time.Time method) _get_combined_mod_val() (psyneulink.core.components.ports.port.Port_Base method) _get_context() (in module psyneulink.core.globals.context) _get_context_string() (psyneulink.core.globals.context.ContextFlags class method) _get_control_signals_for_composition() (psyneulink.core.compositions.composition.Composition method) _get_controller() (psyneulink.core.compositions.composition.Composition method) _get_destination() (psyneulink.core.compositions.composition.Composition method) _get_destination_info_for_output_CIM() (psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism method) _get_destination_info_from_input_CIM() (psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism method) _get_execution_mode() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition method) (psyneulink.library.compositions.emcomposition.EMComposition method) _get_external_cim_input_port() (psyneulink.core.compositions.composition.Composition method) _get_external_modulatory_projections() (psyneulink.core.compositions.composition.Composition method) _get_input_nodes_by_CIM_input_order() (psyneulink.core.compositions.composition.Composition method) _get_input_receivers() (psyneulink.core.compositions.composition.Composition method) _get_invalid_aux_components() (psyneulink.core.compositions.composition.Composition method) _get_log_condition_string() (psyneulink.core.globals.log.LogCondition class method) _get_modulated_info_from_parameter_CIM() (psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism method) _get_modulated_param() (psyneulink.core.components.ports.port.Port_Base method) _get_monitor_for_control_nodes() (psyneulink.core.compositions.composition.Composition method) _get_nested_compositions() (psyneulink.core.compositions.composition.Composition method) _get_nested_node_CIM_port() (psyneulink.core.compositions.composition.Composition method) _get_nested_nodes() (psyneulink.core.compositions.composition.Composition method) _get_param_value_from_tuple() (psyneulink.core.components.component.Component method) _get_parse_method() (psyneulink.core.globals.parameters.ParametersBase method) _get_port_function_value() (psyneulink.core.components.ports.inputport.InputPort static method) (psyneulink.core.components.ports.outputport.OutputPort static method) (psyneulink.core.components.ports.parameterport.ParameterPort static method) (psyneulink.core.components.ports.port.Port_Base static method) _get_port_value_labels() (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) _get_pytorch_fct_param_value() (psyneulink.core.components.functions.function.Function_Base method), [1] _get_satisfied_runtime_param_values() (psyneulink.core.compositions.composition.Composition method) _get_source() (psyneulink.core.compositions.composition.Composition method) _get_source_info_from_output_CIM() (psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism method) _get_source_node_for_input_CIM() (psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism method) _get_source_of_modulation_for_parameter_CIM() (psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism method) _get_standardized_label_dict() (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) _get_standardized_label_dicts() (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) _get_terminal_nodes() (psyneulink.core.compositions.composition.Composition method) _get_validate_method() (psyneulink.core.globals.parameters.ParametersBase method) _get_variable_from_input() (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) (psyneulink.library.components.mechanisms.processing.transfer.recurrenttransfermechanism.RecurrentTransferMechanism method) _get_variable_from_projections() (psyneulink.core.components.ports.inputport.InputPort method) (psyneulink.core.components.ports.outputport.OutputPort method) (psyneulink.core.components.ports.parameterport.ParameterPort method) (psyneulink.core.components.ports.port.Port_Base method) _grid_complete() (psyneulink.core.components.functions.optimizationfunctions.OptimizationFunction method) _grid_evaluate() (psyneulink.core.components.functions.optimizationfunctions.OptimizationFunction method) _handle_allow_probes_for_control() (psyneulink.core.compositions.composition.Composition method) _handle_arg_input_ports() (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) _handle_default_variable() (psyneulink.core.components.component.Component method) (psyneulink.core.components.functions.learningfunctions.BayesGLM method) (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) (psyneulink.core.components.mechanisms.processing.integratormechanism.IntegratorMechanism method) (psyneulink.library.components.mechanisms.processing.integrator.episodicmemorymechanism.EpisodicMemoryMechanism method) _handle_input_shapes() (psyneulink.core.components.component.Component method) _identify_target_nodes() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition method) (psyneulink.library.compositions.emcomposition.EMComposition method) _increment_by_time_scale() (psyneulink.core.scheduling.time.Time method) _infer_target_nodes() (psyneulink.core.compositions.composition.Composition method) _initialize_composition_function_approximator() (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism method) _initialize_parameters() (psyneulink.core.components.component.Component method) (psyneulink.core.components.functions.userdefinedfunction.UserDefinedFunction method) _instantiate_allocation_samples() (psyneulink.core.components.ports.modulatorysignals.controlsignal.ControlSignal method) _instantiate_attributes_after_function() (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism method) (psyneulink.core.components.mechanisms.processing.objectivemechanism.ObjectiveMechanism method) (psyneulink.core.components.mechanisms.processing.transfermechanism.TransferMechanism method) (psyneulink.library.components.mechanisms.processing.transfer.kohonenmechanism.KohonenMechanism method) (psyneulink.library.components.mechanisms.processing.transfer.recurrenttransfermechanism.RecurrentTransferMechanism method) _instantiate_attributes_before_function() (psyneulink.core.components.functions.objectivefunctions.Stability method) (psyneulink.core.components.functions.stateful.integratorfunctions.DriftOnASphereIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.IntegratorFunction method) (psyneulink.core.components.functions.transferfunctions.TransferWithCosts method) (psyneulink.core.components.mechanisms.modulatory.learning.learningmechanism.LearningMechanism method) (psyneulink.core.components.ports.modulatorysignals.controlsignal.ControlSignal method) (psyneulink.core.components.ports.outputport.OutputPort method) (psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism.ContrastiveHebbianMechanism method) (psyneulink.library.components.mechanisms.processing.transfer.recurrenttransfermechanism.RecurrentTransferMechanism method) _instantiate_control_projections() (psyneulink.core.compositions.composition.Composition method) _instantiate_control_signal() (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism method) _instantiate_control_signal_type() (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism method) (psyneulink.core.components.mechanisms.modulatory.gating.gatingmechanism.GatingMechanism method) _instantiate_control_signals() (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism method) (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism method) (psyneulink.library.components.mechanisms.modulatory.control.agt.lccontrolmechanism.LCControlMechanism method) _instantiate_cost_functions() (psyneulink.core.components.functions.transferfunctions.TransferWithCosts method) (psyneulink.core.components.ports.modulatorysignals.gatingsignal.GatingSignal method) _instantiate_defaults() (psyneulink.core.components.component.Component method) _instantiate_deferred_init_control() (psyneulink.core.compositions.composition.Composition method) _instantiate_function() (psyneulink.core.components.component.Component method) (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism method) (psyneulink.core.components.ports.inputport.InputPort method) (psyneulink.core.components.ports.modulatorysignals.controlsignal.ControlSignal method) (psyneulink.core.components.ports.port.Port_Base method) (psyneulink.library.components.mechanisms.processing.integrator.episodicmemorymechanism.EpisodicMemoryMechanism method) _instantiate_function_weights_and_exponents() (psyneulink.core.components.mechanisms.processing.objectivemechanism.ObjectiveMechanism method) _instantiate_input_dict() (psyneulink.core.compositions.composition.Composition method) _instantiate_input_ports() (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism method) (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism method) (psyneulink.core.components.mechanisms.modulatory.learning.learningmechanism.LearningMechanism method) (psyneulink.core.components.mechanisms.processing.objectivemechanism.ObjectiveMechanism method) (psyneulink.library.components.mechanisms.processing.integrator.episodicmemorymechanism.EpisodicMemoryMechanism method) (psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism.ContrastiveHebbianMechanism method) _instantiate_objective_mechanism() (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism method) _instantiate_output_ports() (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism method) (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism method) (psyneulink.core.components.mechanisms.modulatory.learning.learningmechanism.LearningMechanism method) (psyneulink.core.components.mechanisms.processing.processingmechanism.ProcessingMechanism method) (psyneulink.core.components.mechanisms.processing.transfermechanism.TransferMechanism method) (psyneulink.library.components.mechanisms.modulatory.control.agt.lccontrolmechanism.LCControlMechanism method) (psyneulink.library.components.mechanisms.processing.integrator.episodicmemorymechanism.EpisodicMemoryMechanism method) _instantiate_parameter_classes() (psyneulink.core.components.component.Component method) (psyneulink.library.components.projections.pathway.autoassociativeprojection.AutoAssociativeProjection method) _instantiate_parameter_ports() (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) (psyneulink.core.components.mechanisms.processing.transfermechanism.TransferMechanism method) _instantiate_projection_from_port() (psyneulink.core.components.ports.port.Port_Base method) _instantiate_projections() (psyneulink.core.components.ports.inputport.InputPort method) (psyneulink.core.components.ports.modulatorysignals.modulatorysignal.ModulatorySignal method) (psyneulink.core.components.ports.outputport.OutputPort method) (psyneulink.core.components.ports.parameterport.ParameterPort method) (psyneulink.core.components.ports.port.Port_Base method) _instantiate_projections_to_port() (psyneulink.core.components.ports.port.Port_Base method) _instantiate_receiver() (psyneulink.core.components.projections.modulatory.controlprojection.ControlProjection method) (psyneulink.core.components.projections.modulatory.gatingprojection.GatingProjection method) (psyneulink.core.components.projections.modulatory.learningprojection.LearningProjection method) (psyneulink.core.components.projections.pathway.mappingprojection.MappingProjection method) (psyneulink.core.components.projections.projection.Projection_Base method) _instantiate_recurrent_projection() (psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism.ContrastiveHebbianMechanism method) (psyneulink.library.components.mechanisms.processing.transfer.recurrenttransfermechanism.RecurrentTransferMechanism method) _instantiate_sender() (psyneulink.core.components.projections.modulatory.controlprojection.ControlProjection method) (psyneulink.core.components.projections.modulatory.gatingprojection.GatingProjection method) (psyneulink.core.components.projections.modulatory.learningprojection.LearningProjection method) (psyneulink.core.components.projections.projection.Projection_Base method) _is_in_composition() (psyneulink.core.compositions.composition.Composition method) _is_learning() (psyneulink.core.compositions.composition.Composition method) _is_preparing() (psyneulink.core.compositions.composition.Composition method) _learning_signal_source (psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism.ContrastiveHebbianMechanism property) (psyneulink.library.components.mechanisms.processing.transfer.recurrenttransfermechanism.RecurrentTransferMechanism property) _log_value() (psyneulink.core.globals.log.Log method) _logistic() (psyneulink.core.components.functions.stateful.integratorfunctions.IntegratorFunction method) _model_spec_class_name_is_generic (psyneulink.core.components.component.Component attribute) _model_spec_generic_type_name (psyneulink.core.components.component.Component attribute) _model_spec_parameter_blacklist (psyneulink.core.components.component.Component property) (psyneulink.core.components.functions.function.Function_Base property), [1] (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism property) (psyneulink.core.components.projections.projection.Projection_Base property) _nodes_to_execute_after_gradient_calc (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper attribute) _parameter_components (psyneulink.core.components.component.Component property) _parse_arg_generic() (psyneulink.core.components.component.Component method) (psyneulink.core.components.functions.function.Function_Base method), [1] _parse_arg_variable() (psyneulink.core.components.component.Component method) (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) (psyneulink.core.components.ports.outputport.OutputPort method) _parse_function() (psyneulink.core.compositions.composition.Composition method) _parse_function_variable() (psyneulink.core.components.component.Component method) (psyneulink.core.components.mechanisms.modulatory.learning.learningmechanism.LearningMechanism method) (psyneulink.core.components.mechanisms.processing.transfermechanism.TransferMechanism method) (psyneulink.core.components.ports.inputport.InputPort method) (psyneulink.core.components.ports.outputport.OutputPort method) 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(psyneulink.core.components.functions.transferfunctions.Tanh attribute) BIAS (psyneulink.core.compositions.composition.NodeRole attribute) BinomialDistort (class in psyneulink.core.components.functions.transferfunctions) bounds (psyneulink.core.components.functions.optimizationfunctions.GradientOptimization attribute) (psyneulink.core.components.functions.transferfunctions.Exponential attribute) (psyneulink.core.components.functions.transferfunctions.Linear attribute) (psyneulink.core.components.functions.transferfunctions.Logistic attribute) (psyneulink.core.components.functions.transferfunctions.ReLU attribute) (psyneulink.core.components.functions.transferfunctions.SoftMax attribute) (psyneulink.core.components.functions.transferfunctions.Tanh attribute) Buffer (class in psyneulink.core.components.functions.stateful.memoryfunctions) C C (psyneulink.library.compositions.regressioncfa.PV attribute) c_v 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psyneulink.core.scheduling.condition) Composition (class in psyneulink.core.compositions.composition) composition (psyneulink.core.compositions.pathway.Pathway attribute) (psyneulink.core.globals.context.Context attribute) COMPOSITION (psyneulink.core.globals.context.ContextFlags attribute) Composition._CompilationData (class in psyneulink.core.compositions.composition) CompositionFunctionApproximator (class in psyneulink.core.compositions.compositionfunctionapproximator) CompositionInterfaceMechanism (class in psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism) CompositionInterfaceMechanism.Parameters (class in psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism) compute_costs() (psyneulink.core.components.ports.modulatorysignals.controlsignal.ControlSignal method) compute_net_outcome (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism attribute) compute_reconfiguration_cost 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attribute) controller_condition (psyneulink.core.compositions.composition.Composition attribute) controller_mode (psyneulink.core.compositions.composition.Composition attribute) CONTROLLER_OBJECTIVE (psyneulink.core.compositions.composition.NodeRole attribute) controller_time_scale (psyneulink.core.compositions.composition.Composition attribute) ControlMechanism (class in psyneulink.core.components.mechanisms.modulatory.control.controlmechanism) ControlMechanismError ControlProjection (class in psyneulink.core.components.projections.modulatory.controlprojection) ControlProjectionError ControlSignal (class in psyneulink.core.components.ports.modulatorysignals.controlsignal) ControlSignalError convergence_criterion (psyneulink.core.components.functions.optimizationfunctions.GradientOptimization attribute) convergence_threshold (psyneulink.core.components.functions.optimizationfunctions.GradientOptimization attribute) copy() (psyneulink.core.compositions.composition.Graph method) copy_node_values_to_psyneulink() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper method) copy_node_variables_to_psyneulink() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper method) copy_results_to_psyneulink() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper method) CORRELATION (psyneulink.core.globals.keywords.DistanceMetrics attribute) COSINE (psyneulink.core.globals.keywords.DistanceMetrics attribute) cost (psyneulink.core.components.ports.modulatorysignals.controlsignal.ControlSignal attribute) COST (psyneulink.library.compositions.regressioncfa.PV attribute) cost_options (psyneulink.core.components.ports.modulatorysignals.controlsignal.ControlSignal attribute) CostFunctions (class in psyneulink.core.components.functions.transferfunctions) costs 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evaluate() (psyneulink.core.compositions.composition.Composition method) (psyneulink.core.compositions.compositionfunctionapproximator.CompositionFunctionApproximator method) (psyneulink.library.compositions.regressioncfa.RegressionCFA method) evaluate_agent_rep (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism attribute) evaluate_agent_rep() (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism method) EveryNCalls (class in psyneulink.core.scheduling.condition) EveryNPasses (class in psyneulink.core.scheduling.condition) EXACT_TIME (psyneulink.core.scheduling.scheduler.SchedulingMode attribute) exclude_in_autodiff (psyneulink.core.components.projections.projection.Projection_Base attribute) exclude_node_roles() (psyneulink.core.compositions.composition.Composition method) excluded_node_roles (psyneulink.core.compositions.composition.Composition attribute) execute() (psyneulink.core.components.component.Component method) (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) (psyneulink.core.compositions.composition.Composition method) (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition method) execute_node() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper method) (psyneulink.library.compositions.emcomposition.EMComposition.PytorchEMCompositionWrapper method) execute_until_finished (psyneulink.core.components.component.Component attribute) EXECUTION (psyneulink.core.globals.log.LogCondition attribute) execution_count (psyneulink.core.components.component.Component attribute) execution_id (psyneulink.core.globals.context.Context attribute) execution_ids (psyneulink.core.compositions.composition.Composition attribute) execution_list (psyneulink.core.scheduling.scheduler.Scheduler attribute) execution_phase (psyneulink.core.globals.context.Context 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get_nested_output_nodes_at_all_levels() (psyneulink.core.compositions.composition.Composition method) get_nodes_by_role() (psyneulink.core.compositions.composition.Composition method) get_parent() (psyneulink.core.scheduling.time.TimeScale class method) get_parents_from_component() (psyneulink.core.compositions.composition.Graph method) get_port_dict() (psyneulink.core.components.ports.outputport.StandardOutputPorts method), [1] get_previous() (psyneulink.core.globals.parameters.Parameter method) (psyneulink.core.globals.parameters.SharedParameter method) get_required_roles_by_node() (psyneulink.core.compositions.composition.Composition method) get_results_by_nodes() (psyneulink.core.compositions.composition.Composition method) get_roles_by_node() (psyneulink.core.compositions.composition.Composition method) get_total_times_relative() (psyneulink.core.scheduling.time.TimeHistoryTree method) getter (psyneulink.core.globals.parameters.Parameter attribute) 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psyneulink.library.components.mechanisms.processing.leabramechanism) LeabraMechanism (class in psyneulink.library.components.mechanisms.processing.leabramechanism) leak (psyneulink.core.components.functions.stateful.integratorfunctions.LeakyCompetingIntegrator attribute) (psyneulink.core.components.functions.transferfunctions.ReLU attribute) (psyneulink.library.components.mechanisms.processing.transfer.lcamechanism.LCAMechanism attribute) LeakyCompetingIntegrator (class in psyneulink.core.components.functions.stateful.integratorfunctions) learn() (psyneulink.core.compositions.composition.Composition method) (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition method) (psyneulink.library.compositions.emcomposition.EMComposition method) learn_field_weights (psyneulink.library.compositions.emcomposition.EMComposition attribute) learned_components (psyneulink.core.compositions.composition.Composition attribute) learned_projection 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(psyneulink.library.components.mechanisms.processing.transfer.recurrenttransfermechanism.RecurrentTransferMechanism attribute) LEARNING_MODE (psyneulink.core.globals.context.ContextFlags attribute) LEARNING_OBJECTIVE (psyneulink.core.compositions.composition.NodeRole attribute) learning_objective (psyneulink.core.compositions.pathway.Pathway attribute) learning_projections (psyneulink.core.components.mechanisms.modulatory.learning.learningmechanism.LearningMechanism attribute) (psyneulink.library.components.mechanisms.modulatory.learning.autoassociativelearningmechanism.AutoAssociativeLearningMechanism attribute) learning_rate (psyneulink.core.components.functions.learningfunctions.BackPropagation attribute) (psyneulink.core.components.functions.learningfunctions.ContrastiveHebbian attribute) (psyneulink.core.components.functions.learningfunctions.Hebbian attribute) (psyneulink.core.components.functions.learningfunctions.Kohonen attribute) 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(psyneulink.core.components.ports.modulatorysignals.modulatorysignal.ModulatorySignal attribute) modulation_combination_function (psyneulink.core.globals.parameters.Parameter attribute) modulators (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base attribute) (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base property) modulatory_mechanism (psyneulink.core.components.mechanisms.processing.objectivemechanism.ObjectiveMechanism attribute) ModulatoryMechanism_Base (class in psyneulink.core.components.mechanisms.modulatory.modulatorymechanism) ModulatoryMechanismError ModulatoryProjection_Base (class in psyneulink.core.components.projections.modulatory.modulatoryprojection) ModulatorySignal (class in psyneulink.core.components.ports.modulatorysignals.modulatorysignal) ModulatorySignalError module psyneulink.core.components.component psyneulink.core.components.functions.distributionfunctions psyneulink.core.components.functions.function, [1] psyneulink.core.components.functions.learningfunctions psyneulink.core.components.functions.objectivefunctions psyneulink.core.components.functions.optimizationfunctions psyneulink.core.components.functions.selectionfunctions psyneulink.core.components.functions.stateful.integratorfunctions psyneulink.core.components.functions.stateful.memoryfunctions psyneulink.core.components.functions.stateful.statefulfunction psyneulink.core.components.functions.transferfunctions psyneulink.core.components.functions.userdefinedfunction psyneulink.core.components.mechanisms.mechanism psyneulink.core.components.mechanisms.modulatory.control.controlmechanism psyneulink.core.components.mechanisms.modulatory.control.defaultcontrolmechanism psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism psyneulink.core.components.mechanisms.modulatory.gating.gatingmechanism psyneulink.core.components.mechanisms.modulatory.learning.learningmechanism psyneulink.core.components.mechanisms.modulatory.modulatorymechanism psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism psyneulink.core.components.mechanisms.processing.integratormechanism psyneulink.core.components.mechanisms.processing.objectivemechanism psyneulink.core.components.mechanisms.processing.processingmechanism psyneulink.core.components.mechanisms.processing.transfermechanism psyneulink.core.components.ports.inputport psyneulink.core.components.ports.modulatorysignals.controlsignal psyneulink.core.components.ports.modulatorysignals.gatingsignal psyneulink.core.components.ports.modulatorysignals.learningsignal psyneulink.core.components.ports.modulatorysignals.modulatorysignal psyneulink.core.components.ports.outputport psyneulink.core.components.ports.parameterport psyneulink.core.components.ports.port psyneulink.core.components.projections.modulatory.controlprojection psyneulink.core.components.projections.modulatory.gatingprojection psyneulink.core.components.projections.modulatory.learningprojection psyneulink.core.components.projections.modulatory.modulatoryprojection psyneulink.core.components.projections.pathway.mappingprojection psyneulink.core.components.projections.pathway.pathwayprojection psyneulink.core.components.projections.projection psyneulink.core.compositions.composition psyneulink.core.compositions.compositionfunctionapproximator psyneulink.core.compositions.parameterestimationcomposition psyneulink.core.compositions.pathway psyneulink.core.compositions.report psyneulink.core.compositions.showgraph psyneulink.core.globals.context psyneulink.core.globals.defaults psyneulink.core.globals.keywords psyneulink.core.globals.log psyneulink.core.globals.parameters psyneulink.core.globals.preferences.preferenceset psyneulink.core.llvm.__init__ psyneulink.core.scheduling.condition psyneulink.core.scheduling.scheduler psyneulink.core.scheduling.time psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism psyneulink.library.components.mechanisms.modulatory.control.agt.lccontrolmechanism psyneulink.library.components.mechanisms.modulatory.learning.autoassociativelearningmechanism psyneulink.library.components.mechanisms.processing.integrator.ddm psyneulink.library.components.mechanisms.processing.integrator.episodicmemorymechanism psyneulink.library.components.mechanisms.processing.leabramechanism psyneulink.library.components.mechanisms.processing.objective.comparatormechanism psyneulink.library.components.mechanisms.processing.objective.predictionerrormechanism psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism psyneulink.library.components.mechanisms.processing.transfer.kohonenmechanism psyneulink.library.components.mechanisms.processing.transfer.lcamechanism psyneulink.library.components.mechanisms.processing.transfer.recurrenttransfermechanism psyneulink.library.components.projections.pathway.autoassociativeprojection psyneulink.library.components.projections.pathway.maskedmappingprojection psyneulink.library.compositions.autodiffcomposition psyneulink.library.compositions.emcomposition psyneulink.library.compositions.regressioncfa monitor (psyneulink.core.components.mechanisms.processing.objectivemechanism.ObjectiveMechanism attribute) monitor_for_control (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism attribute) (psyneulink.library.components.mechanisms.modulatory.control.agt.lccontrolmechanism.LCControlMechanism attribute) monitor_for_gating (psyneulink.core.components.mechanisms.modulatory.gating.gatingmechanism.GatingMechanism attribute) monitor_weights_and_exponents (psyneulink.core.components.mechanisms.processing.objectivemechanism.ObjectiveMechanism attribute) MONITORED (psyneulink.core.compositions.report.ReportParams attribute) monitored_output_ports 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(psyneulink.core.components.functions.distributionfunctions.DriftDiffusionAnalytical attribute) (psyneulink.core.components.functions.distributionfunctions.ExponentialDist attribute) (psyneulink.core.components.functions.distributionfunctions.GammaDist attribute) (psyneulink.core.components.functions.distributionfunctions.NormalDist attribute) (psyneulink.core.components.functions.distributionfunctions.UniformDist attribute) (psyneulink.core.components.functions.distributionfunctions.UniformToNormalDist attribute) (psyneulink.core.components.functions.function.ArgumentTherapy attribute), [1] (psyneulink.core.components.functions.function.Function_Base attribute), [1] (psyneulink.core.components.functions.selectionfunctions.OneHot attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.AccumulatorIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.AdaptiveIntegrator attribute) 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(psyneulink.core.components.functions.optimizationfunctions.OptimizationFunction attribute) (psyneulink.core.compositions.parameterestimationcomposition.ParameterEstimationComposition attribute) objective_mechanism (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism attribute) (psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism attribute) ObjectiveFunction (class in psyneulink.core.components.functions.objectivefunctions) ObjectiveMechanism (class in psyneulink.core.components.mechanisms.processing.objectivemechanism) ObjectiveMechanismError OFF (psyneulink.core.compositions.report.ReportOutput attribute) (psyneulink.core.compositions.report.ReportParams attribute) (psyneulink.core.compositions.report.ReportProgress attribute) (psyneulink.core.compositions.report.ReportSimulations attribute) (psyneulink.core.globals.log.LogCondition attribute) offset 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(psyneulink.core.components.functions.transferfunctions.Logistic attribute) (psyneulink.core.components.functions.transferfunctions.Tanh attribute) ON (psyneulink.core.compositions.report.ReportProgress attribute) (psyneulink.core.compositions.report.ReportSimulations attribute) on_resume_integrator_mode (psyneulink.core.components.mechanisms.processing.transfermechanism.TransferMechanism attribute) OneHot (class in psyneulink.core.components.functions.selectionfunctions) Operation (class in psyneulink.core.scheduling.condition) operation (psyneulink.core.components.functions.stateful.integratorfunctions.DualAdaptiveIntegrator attribute) optimal_control_allocation (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism attribute) optimal_net_outcome (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism attribute) optimal_value (psyneulink.core.compositions.parameterestimationcomposition.ParameterEstimationComposition attribute) optimization_function (psyneulink.core.compositions.parameterestimationcomposition.ParameterEstimationComposition attribute) OptimizationControlMechanism (class in psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism) OptimizationFunction (class in psyneulink.core.components.functions.optimizationfunctions) optimizations_per_minibatch (psyneulink.core.compositions.composition.Composition attribute) optimized_parameter_values (psyneulink.core.compositions.parameterestimationcomposition.ParameterEstimationComposition attribute) optimizer (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition attribute) (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper attribute) Or (class in psyneulink.core.scheduling.condition) ORIGIN (psyneulink.core.compositions.composition.NodeRole attribute) (psyneulink.core.compositions.pathway.PathwayRole attribute) OrnsteinUhlenbeckIntegrator (class in psyneulink.core.components.functions.stateful.integratorfunctions) outcome (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism attribute) outcome_input_ports (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism attribute) (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism attribute) outcome_input_ports_option (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism attribute) outcome_variables (psyneulink.core.compositions.parameterestimationcomposition.ParameterEstimationComposition attribute) output (psyneulink.core.components.functions.transferfunctions.SoftMax attribute) OUTPUT (psyneulink.core.compositions.composition.NodeRole attribute) output (psyneulink.core.compositions.pathway.Pathway attribute) OUTPUT (psyneulink.core.compositions.pathway.PathwayRole attribute) output_CIM (psyneulink.core.compositions.composition.Composition attribute) output_CIM_ports (psyneulink.core.compositions.composition.Composition attribute) output_labels_dict (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base attribute) output_port (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base attribute) (psyneulink.core.components.mechanisms.processing.objectivemechanism.ObjectiveMechanism attribute) (psyneulink.core.compositions.composition.Composition property) (psyneulink.library.components.mechanisms.processing.objective.comparatormechanism.ComparatorMechanism attribute) output_ports (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base attribute) (psyneulink.core.components.mechanisms.modulatory.learning.learningmechanism.LearningMechanism attribute) (psyneulink.core.components.mechanisms.processing.objectivemechanism.ObjectiveMechanism attribute) (psyneulink.core.compositions.composition.Composition property) (psyneulink.library.components.mechanisms.modulatory.learning.autoassociativelearningmechanism.AutoAssociativeLearningMechanism attribute) (psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM attribute) (psyneulink.library.components.mechanisms.processing.integrator.episodicmemorymechanism.EpisodicMemoryMechanism attribute) (psyneulink.library.components.mechanisms.processing.objective.comparatormechanism.ComparatorMechanism attribute) (psyneulink.library.components.mechanisms.processing.objective.predictionerrormechanism.PredictionErrorMechanism attribute) (psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism.ContrastiveHebbianMechanism attribute) (psyneulink.library.components.mechanisms.processing.transfer.kohonenmechanism.KohonenMechanism attribute) output_size (psyneulink.library.components.mechanisms.processing.leabramechanism.LeabraMechanism attribute) output_source (psyneulink.core.components.mechanisms.modulatory.learning.learningmechanism.LearningMechanism attribute) output_values (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base attribute) (psyneulink.core.components.mechanisms.modulatory.learning.learningmechanism.LearningMechanism attribute) (psyneulink.core.components.mechanisms.processing.objectivemechanism.ObjectiveMechanism attribute) (psyneulink.core.compositions.composition.Composition attribute) (psyneulink.core.compositions.composition.Composition property) (psyneulink.library.components.mechanisms.modulatory.control.agt.lccontrolmechanism.LCControlMechanism attribute) (psyneulink.library.components.mechanisms.modulatory.learning.autoassociativelearningmechanism.AutoAssociativeLearningMechanism attribute) (psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM attribute) (psyneulink.library.components.mechanisms.processing.objective.comparatormechanism.ComparatorMechanism attribute) OutputPort (class in psyneulink.core.components.ports.outputport) OutputPort.Parameters (class in psyneulink.core.components.ports.outputport) OutputPortError outputPortTypes (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism attribute) (psyneulink.core.components.mechanisms.modulatory.gating.gatingmechanism.GatingMechanism attribute) (psyneulink.core.components.mechanisms.modulatory.learning.learningmechanism.LearningMechanism attribute) owner (psyneulink.core.components.functions.distributionfunctions.DriftDiffusionAnalytical attribute) (psyneulink.core.components.functions.distributionfunctions.ExponentialDist attribute) (psyneulink.core.components.functions.distributionfunctions.GammaDist attribute) (psyneulink.core.components.functions.distributionfunctions.NormalDist attribute) (psyneulink.core.components.functions.distributionfunctions.UniformDist attribute) (psyneulink.core.components.functions.distributionfunctions.UniformToNormalDist 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(class in psyneulink.core.compositions.parameterestimationcomposition) ParameterEstimationComposition.Parameters (class in psyneulink.core.compositions.parameterestimationcomposition) ParameterEstimationCompositionError ParameterPort (class in psyneulink.core.components.ports.parameterport) ParameterPortError parameters (psyneulink.core.components.component.Component attribute) (psyneulink.core.compositions.parameterestimationcomposition.ParameterEstimationComposition attribute) (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition attribute) ParametersBase (class in psyneulink.core.globals.parameters) params (psyneulink.core.components.functions.distributionfunctions.ExponentialDist attribute) (psyneulink.core.components.functions.distributionfunctions.GammaDist attribute) (psyneulink.core.components.functions.distributionfunctions.NormalDist attribute) (psyneulink.core.components.functions.distributionfunctions.UniformDist attribute) (psyneulink.core.components.functions.distributionfunctions.UniformToNormalDist attribute) (psyneulink.core.components.functions.objectivefunctions.Distance attribute) (psyneulink.core.components.functions.objectivefunctions.Energy attribute) (psyneulink.core.components.functions.objectivefunctions.Entropy attribute) (psyneulink.core.components.functions.objectivefunctions.Stability attribute) (psyneulink.core.components.functions.transferfunctions.TransferWithCosts attribute) (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper attribute) parent (psyneulink.core.scheduling.time.TimeHistoryTree attribute) parse_context() (in module psyneulink.core.globals.parameters) PASS (psyneulink.core.scheduling.time.TimeScale attribute) pass_ (psyneulink.core.scheduling.time.Time attribute) path_afferents (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base attribute) (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base property) (psyneulink.core.components.ports.port.Port_Base attribute) Pathway (class in psyneulink.core.compositions.pathway) pathway (psyneulink.core.compositions.pathway.Pathway attribute) PathwayRole (class in psyneulink.core.compositions.pathway) pathways (psyneulink.core.compositions.composition.Composition attribute) per_item (psyneulink.core.components.functions.transferfunctions.SoftMax attribute) pertinacity (psyneulink.core.components.functions.function.ArgumentTherapy attribute), [1] phase_convergence_function (psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism.ContrastiveHebbianMechanism attribute) plot() (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) (psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM method) plus_phase_activity (psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism.ContrastiveHebbianMechanism attribute) plus_phase_termination_condition (psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism.ContrastiveHebbianMechanism attribute) plus_phase_termination_threshold (psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism.ContrastiveHebbianMechanism attribute) pnl_internal (psyneulink.core.globals.parameters.Parameter attribute) PNL_VIEW (psyneulink.core.compositions.report.ReportDevices attribute) POISSON_NLL (psyneulink.core.globals.keywords.Loss attribute) port (psyneulink.core.globals.parameters.Parameter attribute) Port_Base (class in psyneulink.core.components.ports.port) port_map (psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism attribute) PortError ports (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base attribute) (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base property) prediction_parameters (psyneulink.core.compositions.compositionfunctionapproximator.CompositionFunctionApproximator attribute) prediction_terms (psyneulink.library.compositions.regressioncfa.RegressionCFA attribute) prediction_vector (psyneulink.library.compositions.regressioncfa.RegressionCFA attribute) (psyneulink.library.compositions.regressioncfa.RegressionCFA.Parameters attribute) PredictionErrorMechanism (class in psyneulink.library.components.mechanisms.processing.objective.predictionerrormechanism) PredictionErrorMechanismError prefs (psyneulink.core.components.component.Component attribute) (psyneulink.core.components.functions.distributionfunctions.DriftDiffusionAnalytical attribute) (psyneulink.core.components.functions.distributionfunctions.ExponentialDist attribute) (psyneulink.core.components.functions.distributionfunctions.GammaDist attribute) (psyneulink.core.components.functions.distributionfunctions.NormalDist attribute) (psyneulink.core.components.functions.distributionfunctions.UniformDist attribute) (psyneulink.core.components.functions.distributionfunctions.UniformToNormalDist attribute) (psyneulink.core.components.functions.function.ArgumentTherapy attribute), [1] (psyneulink.core.components.functions.function.Function_Base attribute), [1] (psyneulink.core.components.functions.learningfunctions.BackPropagation attribute) (psyneulink.core.components.functions.learningfunctions.BayesGLM attribute) (psyneulink.core.components.functions.learningfunctions.ContrastiveHebbian attribute) (psyneulink.core.components.functions.learningfunctions.Hebbian attribute) (psyneulink.core.components.functions.learningfunctions.Kohonen attribute) (psyneulink.core.components.functions.learningfunctions.Reinforcement attribute) (psyneulink.core.components.functions.objectivefunctions.Distance attribute) (psyneulink.core.components.functions.objectivefunctions.Energy attribute) (psyneulink.core.components.functions.objectivefunctions.Entropy attribute) (psyneulink.core.components.functions.objectivefunctions.Stability attribute) (psyneulink.core.components.functions.selectionfunctions.OneHot attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.AccumulatorIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.AdaptiveIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.DriftDiffusionIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.DriftOnASphereIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.DualAdaptiveIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.FitzHughNagumoIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.IntegratorFunction attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.InteractiveActivationIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.LeakyCompetingIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.OrnsteinUhlenbeckIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.SimpleIntegrator attribute) (psyneulink.core.components.functions.stateful.memoryfunctions.Buffer attribute) (psyneulink.core.components.functions.stateful.memoryfunctions.ContentAddressableMemory attribute) (psyneulink.core.components.functions.stateful.memoryfunctions.DictionaryMemory attribute) (psyneulink.core.components.functions.stateful.statefulfunction.StatefulFunction attribute) (psyneulink.core.components.functions.transferfunctions.Angle attribute) (psyneulink.core.components.functions.transferfunctions.BinomialDistort attribute) (psyneulink.core.components.functions.transferfunctions.Dropout 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(psyneulink.core.components.ports.port.Port_Base attribute) (psyneulink.core.compositions.composition.Composition attribute) (psyneulink.library.components.mechanisms.processing.leabramechanism.LeabraFunction attribute) PREPARING (psyneulink.core.globals.context.ContextFlags attribute) previous_long_term_avg (psyneulink.core.components.functions.stateful.integratorfunctions.DualAdaptiveIntegrator attribute) previous_short_term_avg (psyneulink.core.components.functions.stateful.integratorfunctions.DualAdaptiveIntegrator attribute) previous_state (psyneulink.library.compositions.regressioncfa.RegressionCFA.Parameters attribute) previous_t (psyneulink.core.components.functions.stateful.integratorfunctions.FitzHughNagumoIntegrator attribute) previous_time (psyneulink.core.components.functions.stateful.integratorfunctions.DriftDiffusionIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.DriftOnASphereIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.OrnsteinUhlenbeckIntegrator attribute) (psyneulink.core.scheduling.time.TimeHistoryTree attribute) previous_v (psyneulink.core.components.functions.stateful.integratorfunctions.FitzHughNagumoIntegrator attribute) previous_value (psyneulink.core.components.functions.stateful.integratorfunctions.AccumulatorIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.AdaptiveIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.DriftDiffusionIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.DriftOnASphereIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.IntegratorFunction attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.InteractiveActivationIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.LeakyCompetingIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.OrnsteinUhlenbeckIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.SimpleIntegrator attribute) (psyneulink.core.components.functions.stateful.memoryfunctions.Buffer attribute) (psyneulink.core.components.functions.stateful.memoryfunctions.ContentAddressableMemory attribute) (psyneulink.core.components.functions.stateful.memoryfunctions.DictionaryMemory attribute) (psyneulink.core.components.functions.stateful.statefulfunction.StatefulFunction attribute) previous_w (psyneulink.core.components.functions.stateful.integratorfunctions.FitzHughNagumoIntegrator attribute) primary (psyneulink.core.globals.parameters.SharedParameter attribute) primary_learned_projection (psyneulink.core.components.mechanisms.modulatory.learning.learningmechanism.LearningMechanism attribute) (psyneulink.library.components.mechanisms.modulatory.learning.autoassociativelearningmechanism.AutoAssociativeLearningMechanism attribute) print_entries() (psyneulink.core.globals.log.Log method) PROBE (psyneulink.core.compositions.composition.NodeRole attribute), [1] PROCESSING (psyneulink.core.globals.context.ContextFlags attribute) (psyneulink.core.globals.log.LogCondition attribute) ProcessingMechanism (class in psyneulink.core.components.mechanisms.processing.processingmechanism) ProcessingMechanismError Projection_Base (class in psyneulink.core.components.projections.projection) projection_sender (psyneulink.core.components.projections.modulatory.controlprojection.ControlProjection attribute) (psyneulink.core.components.projections.modulatory.gatingprojection.GatingProjection attribute) (psyneulink.core.components.projections.modulatory.learningprojection.LearningProjection attribute) (psyneulink.core.components.projections.pathway.mappingprojection.MappingProjection attribute) projection_type (psyneulink.core.components.ports.inputport.InputPort attribute) (psyneulink.core.components.ports.modulatorysignals.controlsignal.ControlSignal attribute) (psyneulink.core.components.ports.modulatorysignals.gatingsignal.GatingSignal attribute) (psyneulink.core.components.ports.modulatorysignals.learningsignal.LearningSignal attribute) (psyneulink.core.components.ports.outputport.OutputPort attribute) (psyneulink.core.components.ports.parameterport.ParameterPort attribute) projections (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base attribute) (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base property) (psyneulink.core.components.ports.port.Port_Base attribute) (psyneulink.core.compositions.composition.Composition attribute) projections_map (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper attribute) propensity (psyneulink.core.components.functions.function.ArgumentTherapy attribute), [1] prune_feedback_edges() (psyneulink.core.compositions.composition.Graph method) psyneulink.core.components.component module psyneulink.core.components.functions.distributionfunctions module psyneulink.core.components.functions.function module, [1] psyneulink.core.components.functions.learningfunctions module psyneulink.core.components.functions.objectivefunctions module psyneulink.core.components.functions.optimizationfunctions module psyneulink.core.components.functions.selectionfunctions module psyneulink.core.components.functions.stateful.integratorfunctions module psyneulink.core.components.functions.stateful.memoryfunctions module psyneulink.core.components.functions.stateful.statefulfunction module psyneulink.core.components.functions.transferfunctions module psyneulink.core.components.functions.userdefinedfunction module psyneulink.core.components.mechanisms.mechanism module psyneulink.core.components.mechanisms.modulatory.control.controlmechanism module psyneulink.core.components.mechanisms.modulatory.control.defaultcontrolmechanism module psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism module psyneulink.core.components.mechanisms.modulatory.gating.gatingmechanism module psyneulink.core.components.mechanisms.modulatory.learning.learningmechanism module psyneulink.core.components.mechanisms.modulatory.modulatorymechanism module psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism module psyneulink.core.components.mechanisms.processing.integratormechanism module psyneulink.core.components.mechanisms.processing.objectivemechanism module psyneulink.core.components.mechanisms.processing.processingmechanism module psyneulink.core.components.mechanisms.processing.transfermechanism module psyneulink.core.components.ports.inputport module psyneulink.core.components.ports.modulatorysignals.controlsignal module psyneulink.core.components.ports.modulatorysignals.gatingsignal module psyneulink.core.components.ports.modulatorysignals.learningsignal module psyneulink.core.components.ports.modulatorysignals.modulatorysignal module psyneulink.core.components.ports.outputport module psyneulink.core.components.ports.parameterport module psyneulink.core.components.ports.port module psyneulink.core.components.projections.modulatory.controlprojection module psyneulink.core.components.projections.modulatory.gatingprojection module psyneulink.core.components.projections.modulatory.learningprojection module psyneulink.core.components.projections.modulatory.modulatoryprojection module psyneulink.core.components.projections.pathway.mappingprojection module psyneulink.core.components.projections.pathway.pathwayprojection module psyneulink.core.components.projections.projection module psyneulink.core.compositions.composition module psyneulink.core.compositions.compositionfunctionapproximator module psyneulink.core.compositions.parameterestimationcomposition module psyneulink.core.compositions.pathway module psyneulink.core.compositions.report module psyneulink.core.compositions.showgraph module psyneulink.core.globals.context module psyneulink.core.globals.defaults module psyneulink.core.globals.keywords module psyneulink.core.globals.log module psyneulink.core.globals.parameters module psyneulink.core.globals.preferences.preferenceset module psyneulink.core.llvm.__init__ module psyneulink.core.scheduling.condition module psyneulink.core.scheduling.scheduler module psyneulink.core.scheduling.time module psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism module psyneulink.library.components.mechanisms.modulatory.control.agt.lccontrolmechanism module psyneulink.library.components.mechanisms.modulatory.learning.autoassociativelearningmechanism module psyneulink.library.components.mechanisms.processing.integrator.ddm module psyneulink.library.components.mechanisms.processing.integrator.episodicmemorymechanism module psyneulink.library.components.mechanisms.processing.leabramechanism module psyneulink.library.components.mechanisms.processing.objective.comparatormechanism module psyneulink.library.components.mechanisms.processing.objective.predictionerrormechanism module psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism module psyneulink.library.components.mechanisms.processing.transfer.kohonenmechanism module psyneulink.library.components.mechanisms.processing.transfer.lcamechanism module psyneulink.library.components.mechanisms.processing.transfer.recurrenttransfermechanism module psyneulink.library.components.projections.pathway.autoassociativeprojection module psyneulink.library.components.projections.pathway.maskedmappingprojection module psyneulink.library.compositions.autodiffcomposition module psyneulink.library.compositions.emcomposition module psyneulink.library.compositions.regressioncfa module PTX (psyneulink.core.llvm.__init__.ExecutionMode attribute) PTXRun (psyneulink.core.llvm.__init__.ExecutionMode attribute) PV (class in psyneulink.library.compositions.regressioncfa) Python (psyneulink.core.llvm.__init__.ExecutionMode attribute) PyTorch (psyneulink.core.llvm.__init__.ExecutionMode attribute) pytorch_composition_wrapper_type (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition attribute) (psyneulink.library.compositions.emcomposition.EMComposition attribute) Q quarter_size (psyneulink.library.components.mechanisms.processing.leabramechanism.LeabraMechanism attribute) query_input_nodes (psyneulink.library.compositions.emcomposition.EMComposition attribute) R RANDOM_CONNECTIVITY_MATRIX (psyneulink.core.globals.keywords.MatrixKeywords attribute) random_state (psyneulink.core.components.functions.distributionfunctions.ExponentialDist attribute) (psyneulink.core.components.functions.distributionfunctions.GammaDist attribute) (psyneulink.core.components.functions.distributionfunctions.NormalDist attribute) (psyneulink.core.components.functions.distributionfunctions.UniformDist attribute) (psyneulink.core.components.functions.distributionfunctions.UniformToNormalDist attribute) (psyneulink.core.components.functions.learningfunctions.BayesGLM attribute) (psyneulink.core.components.functions.selectionfunctions.OneHot attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.DriftDiffusionIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.DriftOnASphereIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.OrnsteinUhlenbeckIntegrator attribute) (psyneulink.core.components.functions.stateful.memoryfunctions.ContentAddressableMemory attribute) (psyneulink.core.components.functions.stateful.memoryfunctions.DictionaryMemory attribute) (psyneulink.core.components.functions.transferfunctions.BinomialDistort attribute) (psyneulink.core.components.functions.transferfunctions.Dropout attribute) (psyneulink.core.components.functions.transferfunctions.GaussianDistort attribute) (psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM attribute) random_variables (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism attribute) (psyneulink.core.compositions.composition.Composition attribute) (psyneulink.core.compositions.composition.Composition property) randomization_dimension (psyneulink.core.components.functions.optimizationfunctions.OptimizationFunction attribute) RandomMatrix (class in psyneulink.core.components.functions.function), [1] range (psyneulink.core.components.functions.function.RandomMatrix attribute), [1] rate (psyneulink.core.components.functions.stateful.integratorfunctions.AccumulatorIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.AdaptiveIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.DriftDiffusionIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.DriftOnASphereIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.IntegratorFunction attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.InteractiveActivationIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.LeakyCompetingIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.OrnsteinUhlenbeckIntegrator attribute) (psyneulink.core.components.functions.stateful.integratorfunctions.SimpleIntegrator attribute) (psyneulink.core.components.functions.stateful.memoryfunctions.Buffer attribute) (psyneulink.core.components.functions.stateful.memoryfunctions.ContentAddressableMemory attribute) (psyneulink.core.components.functions.stateful.memoryfunctions.DictionaryMemory attribute) (psyneulink.core.components.functions.stateful.statefulfunction.StatefulFunction attribute) (psyneulink.core.components.functions.transferfunctions.Exponential attribute) read_only (psyneulink.core.globals.parameters.Parameter attribute) receiver (psyneulink.core.components.projections.modulatory.controlprojection.ControlProjection attribute) (psyneulink.core.components.projections.modulatory.gatingprojection.GatingProjection attribute) (psyneulink.core.components.projections.modulatory.learningprojection.LearningProjection attribute) (psyneulink.core.components.projections.pathway.mappingprojection.MappingProjection attribute) (psyneulink.core.components.projections.projection.Projection_Base attribute) (psyneulink.library.components.projections.pathway.autoassociativeprojection.AutoAssociativeProjection attribute) receivers (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base attribute) (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base property) reconfiguration_cost (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism attribute) RECORD (psyneulink.core.compositions.report.ReportDevices attribute) recorded_reports (psyneulink.core.compositions.composition.Composition attribute) recurrent_activity (psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism.ContrastiveHebbianMechanism attribute) recurrent_projection (psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism.ContrastiveHebbianMechanism attribute) (psyneulink.library.components.mechanisms.processing.transfer.recurrenttransfermechanism.RecurrentTransferMechanism attribute) recurrent_size (psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism.ContrastiveHebbianMechanism attribute) RecurrentTransferError RecurrentTransferMechanism (class in psyneulink.library.components.mechanisms.processing.transfer.recurrenttransfermechanism) reference (psyneulink.core.globals.parameters.Parameter attribute) regression_weights (psyneulink.library.compositions.regressioncfa.RegressionCFA attribute) (psyneulink.library.compositions.regressioncfa.RegressionCFA.Parameters attribute) RegressionCFA (class in psyneulink.library.compositions.regressioncfa) RegressionCFA.Parameters (class in psyneulink.library.compositions.regressioncfa) RegressionCFA.PredictionVector (class in psyneulink.library.compositions.regressioncfa) Reinforcement (class in psyneulink.core.components.functions.learningfunctions) ReLU (class in psyneulink.core.components.functions.transferfunctions) remove_condition() (psyneulink.core.scheduling.condition.ConditionSet method) (psyneulink.core.scheduling.scheduler.Scheduler method) remove_graph_edge() (psyneulink.core.scheduling.scheduler.Scheduler method) remove_modulated_mechanisms() (psyneulink.library.components.mechanisms.modulatory.control.agt.lccontrolmechanism.LCControlMechanism method) remove_ports() (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) (psyneulink.core.components.mechanisms.modulatory.learning.learningmechanism.LearningMechanism method) (psyneulink.core.components.mechanisms.processing.compositioninterfacemechanism.CompositionInterfaceMechanism method) RemoveEdgeFrom (class in psyneulink.core.scheduling.condition) repeat (psyneulink.core.scheduling.condition.TimeInterval attribute) REPLACE (psyneulink.core.scheduling.condition.Operation attribute) ReportDevices (class in psyneulink.core.compositions.report) ReportOutput (class in psyneulink.core.compositions.report) ReportParams (class in psyneulink.core.compositions.report) ReportProgress (class in psyneulink.core.compositions.report) ReportSimulations (class in psyneulink.core.compositions.report) require_node_roles() (psyneulink.core.compositions.composition.Composition method) required_node_roles (psyneulink.core.compositions.composition.Composition attribute) reset (psyneulink.core.components.mechanisms.processing.integratormechanism.IntegratorMechanism attribute) RESET (psyneulink.core.globals.context.ContextFlags attribute) reset() (psyneulink.core.components.component.Component method) (psyneulink.core.components.functions.learningfunctions.BayesGLM method) (psyneulink.core.components.functions.optimizationfunctions.GradientOptimization method) (psyneulink.core.components.functions.optimizationfunctions.GridSearch method) (psyneulink.core.components.functions.optimizationfunctions.OptimizationFunction method) (psyneulink.core.components.functions.optimizationfunctions.SampleIterator method) (psyneulink.core.components.functions.stateful.integratorfunctions.DriftDiffusionIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.DriftOnASphereIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.DualAdaptiveIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.FitzHughNagumoIntegrator method) (psyneulink.core.components.functions.stateful.integratorfunctions.OrnsteinUhlenbeckIntegrator method) (psyneulink.core.components.functions.stateful.memoryfunctions.Buffer method) (psyneulink.core.components.functions.stateful.memoryfunctions.ContentAddressableMemory method) (psyneulink.core.components.functions.stateful.memoryfunctions.DictionaryMemory method) (psyneulink.core.components.functions.stateful.statefulfunction.StatefulFunction method) (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base method) (psyneulink.core.components.mechanisms.processing.transfermechanism.TransferMechanism method) (psyneulink.core.compositions.composition.Composition method) (psyneulink.core.globals.parameters.Parameter method) (psyneulink.library.components.mechanisms.processing.integrator.ddm.DDM method) reset_grid() (psyneulink.core.components.functions.optimizationfunctions.OptimizationFunction method) reset_params() (psyneulink.core.components.component.Component method) reset_stateful_function_when (psyneulink.core.components.component.Component attribute) rest (psyneulink.core.components.functions.stateful.integratorfunctions.InteractiveActivationIntegrator attribute) results (psyneulink.core.compositions.composition.Composition attribute) (psyneulink.core.compositions.parameterestimationcomposition.ParameterEstimationComposition attribute) retain_for_psyneulink() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper method) retain_losses() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper method) retain_old_simulation_data (psyneulink.core.compositions.composition.Composition attribute) (psyneulink.core.globals.parameters.Parameter attribute) retain_results() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper method) retain_targets() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper method) retain_torch_losses (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition attribute) retain_torch_targets (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition attribute) retain_torch_trained_outputs (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition attribute) retain_trained_outputs() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper method) retained_losses (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper attribute) retained_results (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper attribute) retained_targets (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper attribute) retained_trained_outputs (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition.PytorchCompositionWrapper attribute) retrieval_prob (psyneulink.core.components.functions.stateful.memoryfunctions.ContentAddressableMemory attribute) (psyneulink.core.components.functions.stateful.memoryfunctions.DictionaryMemory attribute) retrieve() (psyneulink.core.components.functions.stateful.memoryfunctions.ContentAddressableMemory method) retrieved_nodes (psyneulink.library.compositions.emcomposition.EMComposition attribute) return_results (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism attribute) rich_diverted_reports (psyneulink.core.compositions.composition.Composition attribute) roles (psyneulink.core.compositions.pathway.Pathway attribute) rpc_pipeline (psyneulink.core.globals.context.Context attribute) rtol (psyneulink.core.scheduling.condition.Threshold attribute) RUN (psyneulink.core.globals.log.LogCondition attribute) (psyneulink.core.scheduling.time.TimeScale attribute) run() (psyneulink.core.compositions.composition.Composition method) (psyneulink.core.scheduling.scheduler.Scheduler method) (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition method) S same_seed_for_all_allocations (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism attribute) same_seed_for_all_parameter_combinations (psyneulink.core.compositions.parameterestimationcomposition.ParameterEstimationComposition attribute) (psyneulink.core.compositions.parameterestimationcomposition.ParameterEstimationComposition.Parameters attribute) sample (psyneulink.library.components.mechanisms.processing.objective.comparatormechanism.ComparatorMechanism attribute) (psyneulink.library.components.mechanisms.processing.objective.predictionerrormechanism.PredictionErrorMechanism attribute) sample_weights() (psyneulink.core.components.functions.learningfunctions.BayesGLM method) SampleIterator (class in psyneulink.core.components.functions.optimizationfunctions) save() (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition method) save_samples (psyneulink.core.components.functions.optimizationfunctions.GaussianProcess attribute) (psyneulink.core.components.functions.optimizationfunctions.GradientOptimization attribute) (psyneulink.core.components.functions.optimizationfunctions.GridSearch attribute) (psyneulink.core.components.functions.optimizationfunctions.OptimizationFunction attribute) save_values (psyneulink.core.components.functions.optimizationfunctions.GaussianProcess attribute) (psyneulink.core.components.functions.optimizationfunctions.GradientOptimization attribute) (psyneulink.core.components.functions.optimizationfunctions.GridSearch attribute) (psyneulink.core.components.functions.optimizationfunctions.OptimizationFunction attribute) saved_samples (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism attribute) saved_values (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism attribute) scale (psyneulink.core.components.functions.distributionfunctions.GammaDist attribute) (psyneulink.core.components.functions.transferfunctions.Exponential attribute) (psyneulink.core.components.functions.transferfunctions.Gaussian attribute) (psyneulink.core.components.functions.transferfunctions.GaussianDistort attribute) (psyneulink.core.components.functions.transferfunctions.Logistic attribute) (psyneulink.core.components.functions.transferfunctions.Tanh attribute) scaling_factor_gain (psyneulink.library.components.mechanisms.modulatory.control.agt.lccontrolmechanism.LCControlMechanism attribute) Scheduler (class in psyneulink.core.scheduling.scheduler) scheduler (psyneulink.core.compositions.composition.Composition property) SchedulingMode (class in psyneulink.core.scheduling.scheduler) search_function (psyneulink.core.components.functions.optimizationfunctions.OptimizationFunction attribute) (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism attribute) search_space (psyneulink.core.components.functions.optimizationfunctions.GaussianProcess attribute) (psyneulink.core.components.functions.optimizationfunctions.GradientOptimization attribute) (psyneulink.core.components.functions.optimizationfunctions.GridSearch attribute) (psyneulink.core.components.functions.optimizationfunctions.OptimizationFunction attribute) search_statefulness (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism attribute) search_termination_function (psyneulink.core.components.functions.optimizationfunctions.OptimizationFunction attribute) (psyneulink.core.components.mechanisms.modulatory.control.optimizationcontrolmechanism.OptimizationControlMechanism attribute) selection_function (psyneulink.core.components.functions.stateful.memoryfunctions.ContentAddressableMemory attribute) (psyneulink.core.components.functions.stateful.memoryfunctions.DictionaryMemory attribute) selection_type (psyneulink.core.components.functions.stateful.memoryfunctions.ContentAddressableMemory attribute) SelectionFunction (class in psyneulink.core.components.functions.selectionfunctions) self_excitation (psyneulink.library.components.mechanisms.processing.transfer.lcamechanism.LCAMechanism attribute) sender (psyneulink.core.components.projections.modulatory.controlprojection.ControlProjection attribute) (psyneulink.core.components.projections.modulatory.gatingprojection.GatingProjection attribute) (psyneulink.core.components.projections.modulatory.learningprojection.LearningProjection attribute) (psyneulink.core.components.projections.pathway.mappingprojection.MappingProjection attribute) (psyneulink.core.components.projections.projection.Projection_Base attribute) (psyneulink.library.components.projections.pathway.autoassociativeprojection.AutoAssociativeProjection attribute) senders (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base attribute) (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base property) separated (psyneulink.library.components.mechanisms.processing.transfer.contrastivehebbianmechanism.ContrastiveHebbianMechanism attribute) set() (psyneulink.core.globals.parameters.Parameter method) set_delivery_conditions() (psyneulink.core.components.component.Component method) set_log_conditions() (psyneulink.core.components.component.Component method) (psyneulink.core.globals.log.Log method) setter (psyneulink.core.globals.parameters.Parameter attribute) (psyneulink.core.globals.parameters.SharedParameter attribute) shadow_inputs (psyneulink.core.components.ports.inputport.InputPort attribute) shadowing_dict (psyneulink.core.compositions.composition.Composition property) shadows (psyneulink.core.compositions.composition.Composition attribute) shared_parameter_name (psyneulink.core.globals.parameters.SharedParameter attribute) SharedParameter (class in psyneulink.core.globals.parameters) shenhav_et_al_compat_mode (psyneulink.core.components.functions.distributionfunctions.DriftDiffusionAnalytical property) short_term_bias (psyneulink.core.components.functions.stateful.integratorfunctions.DualAdaptiveIntegrator attribute) short_term_gain (psyneulink.core.components.functions.stateful.integratorfunctions.DualAdaptiveIntegrator attribute) short_term_rate (psyneulink.core.components.functions.stateful.integratorfunctions.DualAdaptiveIntegrator attribute) show() (psyneulink.core.components.mechanisms.modulatory.control.controlmechanism.ControlMechanism method) (psyneulink.library.components.mechanisms.modulatory.control.agt.agtcontrolmechanism.AGTControlMechanism method) (psyneulink.library.components.mechanisms.modulatory.control.agt.lccontrolmechanism.LCControlMechanism method) show_graph() (psyneulink.core.compositions.composition.Composition method) (psyneulink.core.compositions.showgraph.ShowGraph method) (psyneulink.library.compositions.autodiffcomposition.AutodiffComposition method) ShowGraph (class in psyneulink.core.compositions.showgraph) sigma_0 (psyneulink.core.components.functions.learningfunctions.BayesGLM attribute) SimpleIntegrator (class in psyneulink.core.components.functions.stateful.integratorfunctions) SIMULATION_MODE (psyneulink.core.globals.context.ContextFlags attribute) simulation_results (psyneulink.core.compositions.composition.Composition attribute) SINGELTON (psyneulink.core.compositions.pathway.PathwayRole attribute) SINGLETON (psyneulink.core.compositions.composition.NodeRole attribute) size (psyneulink.core.components.functions.objectivefunctions.Energy attribute) (psyneulink.core.components.functions.objectivefunctions.Stability attribute) slope (psyneulink.core.components.functions.transferfunctions.Linear attribute) SoftMax (class in psyneulink.core.components.functions.transferfunctions) softmax_choice (psyneulink.library.compositions.emcomposition.EMComposition attribute) softmax_gain (psyneulink.library.compositions.emcomposition.EMComposition attribute) softmax_gain_control_node (psyneulink.library.compositions.emcomposition.EMComposition attribute) softmax_node (psyneulink.library.compositions.emcomposition.EMComposition attribute) softmax_threshold (psyneulink.library.compositions.emcomposition.EMComposition attribute) source (psyneulink.core.globals.context.Context attribute) specified_terms (psyneulink.library.compositions.regressioncfa.RegressionCFA.PredictionVector attribute) specify_none (psyneulink.core.globals.parameters.Parameter attribute) SSE (psyneulink.core.globals.keywords.Loss attribute) Stability (class in psyneulink.core.components.functions.objectivefunctions) STANDARD (psyneulink.core.scheduling.scheduler.SchedulingMode attribute) standard_deviation (psyneulink.core.components.functions.distributionfunctions.NormalDist attribute) (psyneulink.core.components.functions.distributionfunctions.UniformToNormalDist attribute) (psyneulink.core.components.functions.transferfunctions.Gaussian attribute) standard_output_port_names (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base attribute) standard_output_ports (psyneulink.core.components.mechanisms.mechanism.Mechanism_Base attribute) (psyneulink.core.components.mechanisms.processing.objectivemechanism.ObjectiveMechanism attribute) 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